<!-- ============================================
     ::DATATOOL:: Generated from "pcassay.asn"
     ::DATATOOL:: by application DATATOOL version 1.9.0
     ::DATATOOL:: on 04/10/2008 16:04:22
     ============================================ -->

<!-- ============================================ -->
<!-- This section is mapped from module "NCBI-PCAssay"
================================================= -->

<!--
 $Id: pcassay.asn,v 1.12 2006/01/10 12:54:50 bolton Exp $
 ===========================================================================

                            PUBLIC DOMAIN NOTICE
               National Center for Biotechnology Information

  This software/database is a "United States Government Work" under the
  terms of the United States Copyright Act.  It was written as part of
  the author's official duties as a United States Government employee and
  thus cannot be copyrighted.  This software/database is freely available
  to the public for use. The National Library of Medicine and the U.S.
  Government have not placed any restriction on its use or reproduction.

  Although all reasonable efforts have been taken to ensure the accuracy
  and reliability of the software and data, the NLM and the U.S.
  Government do not and cannot warrant the performance or results that
  may be obtained by using this software or data. The NLM and the U.S.
  Government disclaim all warranties, express or implied, including
  warranties of performance, merchantability or fitness for any particular
  purpose.

  Please cite the author in any work or product based on this material.

 ===========================================================================

 Authors:  NCBI Structure Group

 File Description:
      ASN.1 definitions for PubChem biological assay data database

 ===========================================================================
-->

<!-- Elements referenced from other modules:
          Pub FROM NCBI-Pub,
          Date,
          Object-id FROM NCBI-General,
          PC-ID,
          PC-Source,
          PC-XRefData FROM NCBI-PCSubstance -->
<!-- ============================================ -->

<!--
 EXPORTS ;
 Container for multiple Assay Data Submissions
-->
<!ELEMENT PC-AssayContainer (PC-AssaySubmit*)>

<!-- Container for Data Depositions and Assay Definitions -->
<!ELEMENT PC-AssaySubmit (
        PC-AssaySubmit_assay, 
        PC-AssaySubmit_data?, 
        PC-AssaySubmit_revoke?)>
<!-- Assay Description or pre-existing Identifier -->
<!ELEMENT PC-AssaySubmit_assay (
        PC-AssaySubmit_assay_aid | 
        PC-AssaySubmit_assay_aid-source | 
        PC-AssaySubmit_assay_descr | 
        PC-AssaySubmit_assay_aidver)>

<!--   Assay Identifier -->
<!ELEMENT PC-AssaySubmit_assay_aid (%INTEGER;)>

<!--   External Assay Identifier -->
<!ELEMENT PC-AssaySubmit_assay_aid-source (PC-Source)>

<!--   Assay Description (new or updated) -->
<!ELEMENT PC-AssaySubmit_assay_descr (PC-AssayDescription)>

<!--   Assay Identifier/Version (for internal use) -->
<!ELEMENT PC-AssaySubmit_assay_aidver (PC-ID)>

<!-- Assay Data Deposition (vector) -->
<!ELEMENT PC-AssaySubmit_data (PC-AssayResults*)>

<!-- List of SID's whose data is to be suppressed -->
<!ELEMENT PC-AssaySubmit_revoke (PC-AssaySubmit_revoke_E*)>


<!ELEMENT PC-AssaySubmit_revoke_E (%INTEGER;)>

<!-- Container for multiple Assay Result Sets -->
<!ELEMENT PC-AssayResultsSet (PC-AssayResults*)>

<!--
 Assay Results provided for a given Substance tested, with respect to the results types defined in the 
   referenced Assay Description
-->
<!ELEMENT PC-AssayResults (
        PC-AssayResults_sid, 
        PC-AssayResults_sid-source?, 
        PC-AssayResults_version?, 
        PC-AssayResults_comment?, 
        PC-AssayResults_outcome?, 
        PC-AssayResults_rank?, 
        PC-AssayResults_data?, 
        PC-AssayResults_url?, 
        PC-AssayResults_xref?)>

<!--
 Internal/External Tracking Information
 Tested Substance ID/Version  [Either valid ID or, 
   if "sid-source" is used, this is a "0" value]
   Note: A valid ID is greater than "0"
-->
<!ELEMENT PC-AssayResults_sid (%INTEGER;)>

<!--
 External Identifier for this Substance
   Note: May be used in-lieu of "sid"
   Note: This is non-optional if "sid" is "0"
-->
<!ELEMENT PC-AssayResults_sid-source (PC-Source)>

<!--
 Version identifier for this AID-SID Result
   Note: Incoming data should set this to be "0"
-->
<!ELEMENT PC-AssayResults_version (%INTEGER;)>

<!--
 Data Annotation/Qualifier and URL to further Depositor Information
 Annotation or qualifier for this Result
-->
<!ELEMENT PC-AssayResults_comment (#PCDATA)>
<!--
 Assay Result Data for this Sample
   Note: Users need populate only those "tid"s, for which there is data, in any order.
 Assay Outcome
-->
<!ELEMENT PC-AssayResults_outcome (%INTEGER;)>

<!--
    inactive	-    Substance is considered Inactive
    active	-    Substance is considered Active
    inconclusive	-    Substance is Inconclusive
    unspecified	-    Substance Outcome is Unspecified
-->
<!ATTLIST PC-AssayResults_outcome value (
        inactive |
        active |
        inconclusive |
        unspecified
        ) #IMPLIED >


<!--
 Rank of Assay Outcome (for result ordering)
   Note: Larger numbers are more active
-->
<!ELEMENT PC-AssayResults_rank (%INTEGER;)>

<!-- Assay Data Reported for this SID (vector) -->
<!ELEMENT PC-AssayResults_data (PC-AssayData*)>

<!-- Depositor provided URL for this Result -->
<!ELEMENT PC-AssayResults_url (#PCDATA)>

<!-- Annotated Cross-Reference Information -->
<!ELEMENT PC-AssayResults_xref (PC-AnnotatedXRef*)>

<!-- Substance Tested Assay Results for a given Assay Result Type defined in the referenced Assay Description -->
<!ELEMENT PC-AssayData (
        PC-AssayData_tid, 
        PC-AssayData_value)>

<!--
 Assay Result Field Type ID (TID)
   Note: Result Field ID's must be greater than "0"
-->
<!ELEMENT PC-AssayData_tid (%INTEGER;)>
<!-- Assay Result, must be the same as defined for TID -->
<!ELEMENT PC-AssayData_value (
        PC-AssayData_value_ival | 
        PC-AssayData_value_fval | 
        PC-AssayData_value_bval | 
        PC-AssayData_value_sval)>

<!ELEMENT PC-AssayData_value_ival (%INTEGER;)>

<!ELEMENT PC-AssayData_value_fval (%REAL;)>

<!ELEMENT PC-AssayData_value_bval EMPTY>
<!ATTLIST PC-AssayData_value_bval value ( true | false ) #REQUIRED >


<!ELEMENT PC-AssayData_value_sval (#PCDATA)>

<!--
 Assay Description provided by an Organization that describes the assay/protocol performed and defines the 
   measured end-points and parameters to be stored.  An Assay Description is not a database table.  You can 
   define as many Result Definitions as needed and they need not be used by all Substances tested.

 Note:  After initial submission, Users cannot add new Result Definitions or modify existing Result Definitions
        beyond the description text; however, users can change the Assay Description Information, as desired.
-->
<!ELEMENT PC-AssayDescription (
        PC-AssayDescription_aid, 
        PC-AssayDescription_aid-source?, 
        PC-AssayDescription_name, 
        PC-AssayDescription_description?, 
        PC-AssayDescription_protocol?, 
        PC-AssayDescription_comment?, 
        PC-AssayDescription_xref?, 
        PC-AssayDescription_results, 
        PC-AssayDescription_pub?, 
        PC-AssayDescription_revision?)>

<!--
 Internal/External Tracking Information
 Assay Description ID/Version  [Either valid ID 
   or, if "aid-source" is used, a "0" dummy value]
   Note: Version is for internal use (only?)
   Note: A valid ID is greater than "0"
-->
<!ELEMENT PC-AssayDescription_aid (PC-ID)>

<!--
 External Identifier for this Assay Description
   Note: May be used in-lieu of "aid"
   Note: This is non-optional if "aid" ID is "0"
-->
<!ELEMENT PC-AssayDescription_aid-source (PC-Source)>

<!--
 Assay Description Information
 Short Assay Name (for display purposes)
-->
<!ELEMENT PC-AssayDescription_name (#PCDATA)>

<!-- Description of Assay -->
<!ELEMENT PC-AssayDescription_description (PC-AssayDescription_description_E*)>


<!ELEMENT PC-AssayDescription_description_E (#PCDATA)>

<!-- Procedure used to generate results -->
<!ELEMENT PC-AssayDescription_protocol (PC-AssayDescription_protocol_E*)>


<!ELEMENT PC-AssayDescription_protocol_E (#PCDATA)>

<!-- Comments or additional information -->
<!ELEMENT PC-AssayDescription_comment (PC-AssayDescription_comment_E*)>


<!ELEMENT PC-AssayDescription_comment_E (#PCDATA)>

<!-- Annotated Cross-Reference Information -->
<!ELEMENT PC-AssayDescription_xref (PC-AnnotatedXRef*)>

<!--
 Allowed Assay Result Types
 Result Definitions (vector)
-->
<!ELEMENT PC-AssayDescription_results (PC-ResultType*)>

<!--
 Additional Information
 Depositor provided publications for this assay
-->
<!ELEMENT PC-AssayDescription_pub (Pub*)>

<!-- Revision identifier for textual description -->
<!ELEMENT PC-AssayDescription_revision (%INTEGER;)>

<!-- Annotated Cross-Reference (XRef) Information to allow the XRef to be qualified, as to its meaning or context -->
<!ELEMENT PC-AnnotatedXRef (
        PC-AnnotatedXRef_xref, 
        PC-AnnotatedXRef_comment?)>

<!-- Cross-Reference Information -->
<!ELEMENT PC-AnnotatedXRef_xref (PC-XRefData)>

<!-- Annotation qualifier describing Cross-Reference meaning -->
<!ELEMENT PC-AnnotatedXRef_comment (#PCDATA)>

<!-- Definition of Allowed Result Types for a given Assay -->
<!ELEMENT PC-ResultType (
        PC-ResultType_tid, 
        PC-ResultType_name, 
        PC-ResultType_description?, 
        PC-ResultType_type, 
        PC-ResultType_constraints?, 
        PC-ResultType_unit?, 
        PC-ResultType_sunit?, 
        PC-ResultType_transform?, 
        PC-ResultType_stransform?)>

<!--
 Tracking or Description Information
 Assay Result Field Type ID (TID)
-->
<!ELEMENT PC-ResultType_tid (%INTEGER;)>

<!-- Result Field Name (short name for display) -->
<!ELEMENT PC-ResultType_name (#PCDATA)>

<!-- Result Field Description -->
<!ELEMENT PC-ResultType_description (PC-ResultType_description_E*)>


<!ELEMENT PC-ResultType_description_E (#PCDATA)>
<!--
 Result Data Type and Validation Information
 Result Data Type
-->
<!ELEMENT PC-ResultType_type (%INTEGER;)>
<!ATTLIST PC-ResultType_type value (
        float |
        int |
        bool |
        string
        ) #IMPLIED >

<!--
 Allowed Values, used for validating incoming data
 If type is "float"
-->
<!ELEMENT PC-ResultType_constraints (
        PC-ResultType_constraints_fset | 
        PC-ResultType_constraints_fmin | 
        PC-ResultType_constraints_fmax | 
        PC-ResultType_constraints_frange | 
        PC-ResultType_constraints_iset | 
        PC-ResultType_constraints_imin | 
        PC-ResultType_constraints_imax | 
        PC-ResultType_constraints_irange | 
        PC-ResultType_constraints_sset)>

<!--   Allowed values must be equal to one of these -->
<!ELEMENT PC-ResultType_constraints_fset (PC-ResultType_constraints_fset_E*)>


<!ELEMENT PC-ResultType_constraints_fset_E (%REAL;)>

<!--   Allowed values (x) must be [ fmin <= x ] -->
<!ELEMENT PC-ResultType_constraints_fmin (%REAL;)>

<!--   Allowed values (x) must be [ x <= fmax ] -->
<!ELEMENT PC-ResultType_constraints_fmax (%REAL;)>

<!--   Minimum/Maximum Range [ min <= x <= max ] -->
<!ELEMENT PC-ResultType_constraints_frange (PC-RealMinMax)>

<!--
 If type is "int"
   Allowed values must be equal to one of these
-->
<!ELEMENT PC-ResultType_constraints_iset (PC-ResultType_constraints_iset_E*)>


<!ELEMENT PC-ResultType_constraints_iset_E (%INTEGER;)>

<!--   Allowed values (x) must be [ imin <= x ] -->
<!ELEMENT PC-ResultType_constraints_imin (%INTEGER;)>

<!--   Allowed values (x) must be [ x <= imax ] -->
<!ELEMENT PC-ResultType_constraints_imax (%INTEGER;)>

<!--   Minimum/Maximum Range [ min <= x <= max ] -->
<!ELEMENT PC-ResultType_constraints_irange (PC-IntegerMinMax)>

<!--
 If type is "string"
   Allowed values must be equal to one of these
-->
<!ELEMENT PC-ResultType_constraints_sset (PC-ResultType_constraints_sset_E*)>


<!ELEMENT PC-ResultType_constraints_sset_E (#PCDATA)>
<!--
 Unit information provides the units for the values reported for this TID.  For example, if the values 
   reported for this TID are a concentration, e.g., micro-molar, setting the unit "um" allows PubChem to 
   know that the value, e.g., "1.3", is actually "1.3 uM".  This also allows PubChem to properly report the 
   units when displaying the reported values for this TID.  If the enumerated units provided below are 
   insufficient, you may represent the units as a string in the optional "sunit" field (see below).
 Units for Value
-->
<!ELEMENT PC-ResultType_unit (%INTEGER;)>

<!--
    ppt	-  Parts per Thousand
    ppm	-  Parts per Million
    ppb	-  Parts per Billion
    mm	-  milliM
    um	-  microM
    nm	-  nanoM
    pm	-  picoM
    fm	-  femtoM
    mgml	-  milligrams per mL
    ugml	-  micrograms per mL
    ngml	-  nanograms per mL
    pgml	-  picograms per mL
    fgml	-  femtograms per mL
    m	-  Molar
    percent	-  Percent
    ratio	-  Ratio
    sec	-  Seconds
    rsec	-  Reciprocal Seconds
    min	-  Minutes
    rmin	-  Reciprocal Minutes
    day	-  Days
    rday	-  Reciprocal Days
-->
<!ATTLIST PC-ResultType_unit value (
        ppt |
        ppm |
        ppb |
        mm |
        um |
        nm |
        pm |
        fm |
        mgml |
        ugml |
        ngml |
        pgml |
        fgml |
        m |
        percent |
        ratio |
        sec |
        rsec |
        min |
        rmin |
        day |
        rday |
        none |
        unspecified
        ) #IMPLIED >


<!-- Unit Type (as a String) -->
<!ELEMENT PC-ResultType_sunit (#PCDATA)>
<!--
 Value Transform information qualifies the values reported for this TID.  For example, if the values
   reported for this TID are "-Log10 GI50", you may want to consider setting
   the "nlog" value below.  In doing so, PubChem would know that the value, e.g., "5.0" 
   is actually "1.0e-5".  If the transformation applied is not listed, you may represent
   this transformation as a string in the "stransform" (see below) for eventual inclusion 
   in the enumerated transform list below.
 Value Type Details
-->
<!ELEMENT PC-ResultType_transform (%INTEGER;)>

<!--
    linear	-  Linear Scale (x)
    ln	-  Natural Log Scale (ln x)
    log	-  Log Base 10 Scale (log10 x)
    reciprocal	-  Reciprocal Scale (1/x)
    negative	-  Negative Linear Scale (-x)
    nlog	-  Negative Log Base 10 Scale (-log10 x)
    nln	-  Negative Natural Log Scane (-ln x)
-->
<!ATTLIST PC-ResultType_transform value (
        linear |
        ln |
        log |
        reciprocal |
        negative |
        nlog |
        nln
        ) #IMPLIED >


<!-- Value Transform Type (as a String) -->
<!ELEMENT PC-ResultType_stransform (#PCDATA)>

<!-- Mininum and Maximum Constraints on an Integer Value (used for validating incoming data) -->
<!ELEMENT PC-IntegerMinMax (
        PC-IntegerMinMax_min, 
        PC-IntegerMinMax_max)>

<!-- Minimum Value Allowed -->
<!ELEMENT PC-IntegerMinMax_min (%INTEGER;)>

<!-- Maximum Value Allowed -->
<!ELEMENT PC-IntegerMinMax_max (%INTEGER;)>

<!-- Mininum and Maximum Constraints on a Real Value (used for validating incoming data) -->
<!ELEMENT PC-RealMinMax (
        PC-RealMinMax_min, 
        PC-RealMinMax_max)>

<!-- Minimum Value Allowed -->
<!ELEMENT PC-RealMinMax_min (%REAL;)>

<!-- Maximum Value Allowed -->
<!ELEMENT PC-RealMinMax_max (%REAL;)>